AVATAR-A Value Added TrAnscRiptome database

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　A Value Added Transcriptome Database

2004/9/15

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Alternative Splicing Gene Search Tool

Select Organism ?　 HS MM RN DM CE AT AM
No. of EST to support a splicing site ≧

Search Gene by

　　　　"Gene Name" e.g. Sod , Akr1a4
　　　　"mRNA Accession" e.g. NM_000454
　　　　"Protein Accession" e.g. NP_000445,NP_008823
　　　　"Contig gi" e.g. 17458490 ;
　　　　"Chromosome" e.g. 3, 19 , X , Y , II ,V
　　　　"Cytobank" e.g. 1p36 , 5p11.2 , 8 53.5 cM

Search Gene by AS Type:

　 ≧ 　

　　　　"Sum of AS type" Sum of Total Alternative Splicing site in A Gene
　　　　"Exon Skipping", "3' AS (Donor)".. Sort No. of the AS Site by the AS Type

Statistics of Alternative splicing events

EST support:2

Organism	Exon Skipping	3' AS	5' AS	ME	Total
Hs (Homo sapiens)	7728	4292	4085	176	16281
Mm (Mus musculus)	2772	1504	1488	65	5829
Rn (Rattus norvegicus)	158	145	162	0	465
Dm (Drosophila melanogaster)	8	100	106	0	214
Ce (Caenorhabditis elegans)	7	50	63	1	121
At (Arabidopsis thaliana)	2	59	76	0	173

AVATAR DATABASE is consortium of the Department of Information Engineering and Computer Science , Feng Chia University, Department of Computer Science and Information Management, Providence University, and the Department of Life Science, National Tsing-Hua University